Abstract: The clinical courses for clinical medicine students in Jilin University are undertaken by three affiliated hospitals. The teaching management department in our university has implemented various teaching organization modes in the clinical teaching stage for many years and achieved some effects. With the changes in the relationship among clinical work, teaching and research in hospitals, our university has gradually explored the teaching organization mode of students’ self-selectioncourses among the hospitals, aiming to improve the quality of medical teaching. The implementation of student self-selection mode has boosted the enthusiasm of affiliated hospitals as well as the motivation of teachers and students in teaching and learning, therefore driving deep the reform of teaching mode and methods, and finally improving teaching quality, proving that it is a useful exploration and practice of teaching management innovation.